Pumpkin has got to be one of my favorite fall flavors, especially in healthy pumpkin muffins or whole wheat pumpkin bread. Add a generous dose of cloves, cinnamon, and nutmeg, and I’m in love. You can’t find an easier pumpkin muffin recipe than this one. A sweet treat without loading up on white sugar.

These One-Bowl Healthy Pumpkin Muffins became a huge hit during the fall a few years ago and it remains one of my most popular recipe posts. They deserve all those accolades and more. They are the easiest, most moist muffins you’ll ever find.
Here are the perks of this little recipe gem:
- One bowl
- No fancy order of ingredients – just dump together and mix
- Super moist! Everyone LOVES the taste!
- Healthy upgrades to basic recipe:
- Option for healthy fats; lower in fat than some recipes
- Recipe works great with whole wheat flour
- Pumpkin is a super food!


Pumpkin Muffins or Bread
- Yield: 12 1x
- Category: Bread
Ingredients
- 3/4 cup honey
- 2 eggs
- 1 2/3 c. whole wheat or sprouted flour*
- 1/2 c. melted butter or coconut oil**
- 1/4 c. cold water
- 1 c. pumpkin (about half a 15 oz can)
- 1/2 t. cinnamon
- 1/2 t. nutmeg
- 1/4 t. baking powder
- 1 t. baking soda
- 3/4 t. salt
- 1/2 t. cloves
- 1 Tbs. molasses (opt.)
Instructions
- Mix all ingredients together.
- Put in greased loaf pan or muffin tin.
- Bake at 325 degrees.
- Bread (one loaf) = 65-80 minutes
- Muffins = 35-40 minutes
- Mini muffins = 25 minutes
Notes
Watch timing carefully as honey browns faster!
I often use part or all “white whole wheat flour” for muffins.
Find out why I use butter and coconut oil.
Baking muffins is a great opportunity to get your kids in the kitchen with you. Through the Kids Cook Real Food eCourse they can learn to follow a recipe, measure, pour and even use the oven! And you better believe these pumpkin muffins will taste even better if your kids make them (hint – that’s a great way to get kids to eat well…let them do the cooking/baking!).
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This recipe started out as your average run of the mill pumpkin muffin recipe, and I was sure I could tweak it to be more healthy. Here’s the recipe I started with, before I transitioned to “real food:”
The Original (not-so-healthy!!!) Pumpkin Muffin Recipe:
- 1 ½ c. sugar
- ½ t. cinnamon
- 2 eggs
- ½ t. nutmeg
- ¼ t. baking powder
- 1 2/3 c. flour
- 1 t. baking soda
- ½ c. oil ¾ t. salt
- ½ c. cold water
- ½ t. cloves
- 1 c. pumpkin (about half a 15 oz can)
Mix all ingredients together. Put in greased loaf pan or muffin tin. Bake at 325 degrees.
That recipe yielded an awesome and sort of healthy muffin that tasted amazing – but I knew I could do better. I tweaked the recipe bit by bit until, in my humble opinion, it became totally healthy. Here are the steps I followed:
- Level one: decrease the sugar by 1/4 or even 1/2 cup (1 c. sugar total)
- Level two: use half whole wheat flour
- Level three: make the “oil” melted butter
- Level four: get rid of the refined sugar and white flour altogether
Once I had made the first few changes, moving to level four (the top recipe) wasn’t that huge of a leap, but if I had tried to start there, I don’t think it would have been possible. May your “baby steps” become possible with your “not-so-healthy” favorite recipes as well!
Eventually, I even fiddled with another Healthy-EST upgrade:
SOAKED Pumpkin Muffins Recipe
Does soaking make a difference? That’s the million dollar question. There is enough anecdotal evidence that soaking does something, something good, that I’m still a believer, even as I research further.
It took one batch of concave muffins, still moist but rather dense, for me to nail the soaked version, which really is within 95% as good as the original.
Print
Soaked Famous Pumpkin Muffins
- Prep Time: 24 hours
- Cook Time: 45 mins
- Total Time: 24 hours 45 mins
- Yield: 12 1x
- Category: Bread
Ingredients
- 1 2/3 cup white whole wheat flour
- 1 c. pureed pumpkin
- 3/4 c. water
- 2 Tbs buttermilk or plain yogurt
- 1/2 c. melted butter or refined coconut oil (use the code STEWARDSHIP for 10% off at that site!)
- 1 c. sugar or sucanat
- 2 eggs
- 1/2 tsp. baking powder
- 1 1/2 tsp. baking soda
- 3/4 tsp. salt
- 1/2 tsp. cloves
- 1/2 tsp. cinnamon
- 1/2 tsp. nutmeg
Instructions
- Soak white whole wheat flour, pureed pumpkin (optional), water, buttermilk/yogurt, and butter/coconut oil together overnight or for 12-24 hours on the countertop.
- When ready to bake, add the sweetener, eggs, baking soda, baking powder, salt (Use the code kitchenstewardship for 15% off of your first purchase), and 3 spices. Mix well – be sure to scrape the bottom of the bowl a few times and beat hard to get everything fully incorporated.
- Pour into muffin cups and bake 40-45 minutes at 325 degrees F (35-40 with honey). They’ll be a bit more moist than you’re used to with the “toothpick test”.
- Do not overbake!
- Allow to rest 5 minutes in the tins, then tip out to cool on racks.
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Sometimes soaked versions of recipes can leave something to be desired. The ultimate compliment on this one: Husband said, “Yum!” and he didn’t notice anything different than normal. Yee-hah!
Adapt Your Own Recipes for Soaking Grains
Many recipes can be adapted for soaking, some easily, some take a little more work. Quickbreads aren’t the easiest, but biscuits, pancakes, breads, and tortillas are usually no problem.
1. How much liquid does your recipe call for? The cookbook Nourishing Traditions claims that 1 Tbs acidic medium per cup of liquid will satisfy the requirements for the proper soaking pH. Adjust your recipe likewise. For example, if your bread recipe contains 3 cups of water or milk, start with 3 Tbs of whey, vinegar, lemon juice (etc.) in your measuring cup and add liquid to complete the 3 cups.
2. Mix the liquid and flour (or oats or other grains) together 12-24 hours before baking. Overnight is usually a convenient time. You can include the fat and/or sweetener in the recipe at this point if you would like.
3. Leave the mixture covered to soak at room temperature, or better yet, somewhere even warmer. The oven with the pilot light (or just oven light) on is a great place for soaking.
4. In the morning or after the 12-24 hour soak, when you are ready to complete the recipe, simply add the remaining ingredients and bake as directed.
- If your recipe calls for yogurt or buttermilk anyway, that is sufficient to satisfy the acidic medium. You won’t have to add anything to the recipe; just mix the yogurt/buttermilk and flour or grains overnight, then proceed with the recipe as written.
- Special instructions for yeast bread: Since the yeast cannot be added for the overnight soak, you’ll need to withhold 1/2 cup of water from your recipe with which to ‘proof’ the yeast. When you’re ready to finish the dough, mix the yeast with 1/2 cup water and sweetener, proof for 5 minutes at room temperature, then add to the dough that has been soaking overnight. Knead and allow to rise as directed in your recipe.
- For biscuits, tortillas, or other bread products that call for cutting a solid fat into the flour, then adding a liquid, just make the dough as you normally would except add the acidic medium to your liquid and withhold the salt or baking powder/soda. (Salt inhibits the soaking process.) Leave the nearly-finished dough on the counter overnight, and gently (in the case of a pastry) add the salt before baking. If you find that your pastry is overhandled with this method, you can add the salt at the beginning and just do the best you can with the soaking.
- If you adapt a recipe that uses baking powder to rise like muffins or cornbread, you may need to decrease the baking powder and add up to 1 tsp. baking soda to make up for the sour factor in the soaking medium. Try the recipe normally first, but if your result is more dense than you’re used to, adjust as needed.
I learned the trick of adding some baking soda (and sometimes reducing the baking powder) from the More-with-Less Cookbook’s cornbread option using sour milk. The acidity of sour milk, buttermilk, or yogurt necessitates a small change in the rising agent. Concave muffins aren’t that cute!
You can see the ever-so-simple directions for soaking oatmeal too, and if you’ve never soaked anything, that’s a great place to start!

If you feel like soaking grains or other traditional foods preparation techniques are a bit foreign to you, do consider taking the GNOWFGLINS eCourse, where you’ll learn through video, audio, recipes, and textual information how to get comfortable with 14 different techniques. There’s also a sourdough eCourse that I’m teaching a few lessons in!
Food allergies? I also have a wonderful gluten-free pumpkin muffin recipe that is also egg-free and dairy-free!
Leftover Pumpkin?
Now the million dollar question: what do you do with the rest of the pumpkin in the can? Here’s my list of twenty ways to use up pumpkin!

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Love this recipe but i would add that the second time we made it, I wasn’t able to break up all the bits of flour (I do not have an electric mixer–I do everything by hand!) and I think it was because the flour sat on top of a wet ingredient for a few minutes and created little lumps. I would probably not make this 1-bowl in the future because of that, and mix the wet and dry ingredients in separate bowls and then mix. My daughter loved the first time we made it and gagged the second time we made it. Just FYI in case anyone runs into the same problem!!
Thanks for sharing! Good to know!
These muffins are AMAZING! My 7 3/4 yr old daughter just made them (Katie taught her 😉 ). She left out the nutmeg and cloves (cause I didn’t have any in the house and she wanted to cook NOW) and used homemade pumpkin puree (from pie pumpkins). She got 12 full-size muffins and 12 mini muffins out of it. One adult (me) and 3 kids in the house right now – all the mini muffins are gone and they’re starting on the full-size ones :D. I always trust this site for good recipes, but even I was surprised by how fluffy and delicious these are! I’m going to make the gluten-free version using rice flour next to compare (and cause I need something to serve a friend who’s visiting next month).
Woot! Love it! You cannot mess this recipe up, it’s the best one I’ve got! 😉 Katie
Hello!
Love your recipe. 1/2 teaspoon of ginger added makes delicious spicy muffins! Thank you for sharing.
I LOVE this recipe!!! It has an amazing pumpkin flavor with the spices and I feel that I’m having a healthy snack. Love putting cream cheese on top of it too. Thanks for the great tweaked recipe! 🙂
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I made this last night from my Jarrahdale pumpkin that I got at my fm. I halved the recipe (we are only 2 at the moment and only have 1 muffin per day), left out the water, and added a little bit of ginger and vanilla extract. I also brushed a tiny bit of honey on top for the last five minutes of baking. I want more…yum!
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I substituted unsweetened apple sauce for the oil/butter. I used 1/2 a cup apple sauce.
My family loves this recipe! I wanted something without sugar and made with butter, this fit the bill! I have made muffins, we love them, but it also makes a great cake too! I put a cream cheese frosting on it….so good:) I make it glutten free, using rice flour, perfect every time! We now live in New Zealand, no canned pumkin here, but cooked mashed pumkin works great….so worth the effort! Thanks so much for posting this amazing recipe! Cheers mate, from down under:) God Bless
Katie, I thought I remembered reading somewhere on your site about adding leftover oatmeal to muffin mix, but I can’t seem to find it. What would be your recommendations on that? BTW, my son just LOVES these pumpkin muffins! I try to have them on hand all the time for quick breakfasts or healthy snacks!
Shauna,
I have a bread recipe that uses leftover oatmeal, and – Oh, I know! – it’s in Carrie Isaac’s book “From Garbage to Gourmet” and it might have been cookies, not muffins. I think I’d delete 1/4 cup flour, add 1/2-3/4 cup cooked oatmeal, and maybe delete some of the fat. ??? If you’ve made the recipe many times, you could at least know the consistency you were looking for…but I’ve never done anything like that! 😉 Katie
Thanks so much, Katie, that’s a great starting spot! I have GOT to get that book!! I was looking at a link for it and it is now in my May budget!!
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Just curious, can I replace the butter with applesauce like I do in most other recipes when trying to cut out the oil? Has anyone tried this and will the consistency still be right? Thanks!
Alayna,
I’ve never tried it, because I believe in butter. 😉 http://staging.kitchenstewardship.com/2009/10/05/monday-mission-switch-to-butter/
I would not try replacing 100% of the butter with applesauce, although some would probably be fine. These muffins are incredibly versatile. Check the rest of the comments to see if anyone has done it; I can’t remember. Also, pumpkin puree is a great sub for oil and would be lower in sugar and higher in nutrients than applesauce, plus obviously very appropriate for this recipe. I recommend trying 1/4 c. extra pumpkin and halving the fat.
Enjoy! 🙂 Katie
Alayna, I used apple sauce, and the muffins are great!
Can raw honey be used in the recipe? Should it be melted first?
Lara,
Yes, raw honey is fine, but if you pay more for raw, you might want to use regular local honey since it will be baked. You wouldn’t have to melt it as long as you can stir it in evenly with whatever appliance you’re using. Enjoy! 🙂 Katie